Recent publications by MSc students
We encourage students to consider publication of the MSc research project.
Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations
Nelson Ndegwa, Richard G. Côté, David Ovelleiro, Peter D'Eustachio, Henning Hermjakob, Juan A. Vizcaíno and David Croft
Database 2011
The Reactome BioMart
Robin A. Haw, David Croft, Christina K. Yung, Nelson Ndegwa, Peter D'Eustachio, Henning Hermjakob and Lincoln D. Stein
Database 2011
Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae
Carretero-Paulet L, Galstyan A, Roig-Villanova I, Martínez-García JF, Bilbao-Castro JR, Robertson DL.
Plant Physiol. 2010 Jul;153(3):1398-412
Ten Simple Rules for Organising a Virtual Conference - Anywhere
Gichora NN, Fatumo SA, Ngara MV, Chelbat N, Ramdayal K, Opap KB, Siwo GH, Adebiyi MO, El Gonnouni A, Zofou D, Maurady AA, Adebiyi EF, de Villiers EP, Masiga DK, Bizzaro JW, Suravajhala P, Ommeh SC, Hide W.
PLoS Comput Biol. 2010 Feb 26; 6(2):e1000650
Pleiotropic effects of negative energy balance in the post partum dairy cow on splenic gene expression: repercussions for innate and adaptive immunity
Dermot Gerard Morris, Sinead M. Waters, Sean D McCarthy, Joe Patton, Bernadette Earley, Richard Fitzpatrick, John J Murphy, Michael G Diskin, David A Kenny, Andy Brass and D Claire Wathes
Physiol. Genomics (June 30, 2009). doi:10.1152/physiolgenomics.90394.2008
Annotated chromosome maps for renal disease
McKnight AJ, O’Donoghue D,
Maxwell AP.
Human Mutation 2009; 30(3):314-20. DOI 10.1002/humu.20885; PMID:
19085929
Mechanisms Controlling Anaemia in Trypanosoma congolense Infected Mice
Harry A. Noyes, Mohammad H. Alimohammadian, Morris Agaba, Andy Brass, Helmut Fuchs, Valerie Gailus-Durner, Helen Hulme, Fuad Iraqi, Stephen Kemp, Birgit Rathkolb, Eckard Wolf, Martin Hrabé de Angelis, Delnaz Roshandel, Jan Naessens
PLoS ONE 2009, 4(4):e5170
Hepatitis C virus genotypes distribution and transmission risk factors in Luxembourg from 1991 to 2006
Roman F, Hawotte K, Struck D, Ternes AM, Servais JY, Arendt V, Hoffman P, Hemmer R, Staub T, Seguin-Devaux C, Schmit JC.
World Journal of Gastroenterology
Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics
Katja Baerenfaller, Jonas Grossmann, Monica A. Grobei, Roger Hull, Matthias Hirsch-Hoffmann,
Shaul Yalovsky, Philip Zimmermann, Ueli Grossniklaus, Wilhelm Gruissem, Sacha Baginsky
Science (advance publication in Science Express)
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
Holden BJ*, Pinney JW*, Lovell SC, Amoutzias GD, Robertson DL.
BMC Bioinformatics 2007, 8:289
In silico comparative genomic analysis of GABAA receptor
transcriptional regulation
Christopher J Joyce
BMC Genomics 2007, 8:203
REMA: A computer-based mapping tool for analysis of restriction sites in multiple DNA sequences
Szubert J, Reiff C, Thorburn A, Singh BK.
J Microbiol Methods. 2007 May;69(2):411-3
A novel bioinformatics approach identifies candidate genes for the synthesis and feruloylation of arabinoxylan
Mitchell RA, Dupree P, Shewry PR.
Plant Physiol. 2007 May;144(1):43-53.
Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence
Mitchell RA, Castells-Brooke N, Taubert J, Verrier PJ, Leader DJ, Rawlings CJ.
Nucleic Acids Res. 2007 Apr 16; [Epub ahead of print]
A Tumor Progression Model for Hepatocellular Carcinoma–
Bioinformatic Analysis of Genomic Data
Poon TC, Wong N, Lai PB, Rattray M, Johnson PJ, Sung JJ.
Gastroenterology. 2006 Oct;131(4):1262-70
* = joint first authorship
Updated 28 February 2011 by Heather Vincent